UGANDA NATIONAL BUDGET

Uganda FY 2026/27 Year on the Horizon: Tax Outlook and the Data-Driven Tax Controversy Era

Mark Ruhindi is a corporate and tax lawyer. He is ranked as Highly Regarded in the ITR World Tax rankings and heads one of the leading tax practices in Uganda.

The past year confirmed a trend we highlighted in our 2025 year-in-review and 2026 outlook notes: tax enforcement is becoming more data-driven, transaction-sensitive and consequential. URA’s ability to compare VAT returns, income tax returns, EFRIS data, financial statements, bank information, customs records, withholding tax records and third-party disclosures is now central to the enforcement environment.

For businesses, this means tax controversy increasingly begins long before an assessment is issued. It begins at the invoice, contract, board resolution, share register, payroll configuration, import entry, loan agreement, EFRIS record, valuation report or reconciliation schedule.

The 2026 tax amendment package reinforces that shift. The amendments widen collection points, strengthen withholding mechanisms, preserve targeted incentives, increase the VAT registration threshold, introduce or expand sector-specific taxes, and continue the move toward e-invoicing and recurring reporting.

Uganda M&A Tax Structuring: High Court Clarifies the Interplay Between Roll-over Relief and Withholding Tax Rules in URA v Tunga Nutrition

The High Court has allowed URA’s appeal and set aside the Tax Appeals Tribunal’s decision that had earlier interpreted(in the taxpayer’s favour), key Income Tax Act provisions governing roll-over relief in M&A transactions.

The decision matters for M&A because it treats tax-neutral restructuring as a legal outcome that must be supported by the transaction documents and deal-close file.

An asset-for-share transfer may form part of a merger, joint-venture contribution, pre-completion reorganisation or group restructuring. But where the taxpayer claims section 76 roll-over relief, the record must show that the conditions set by the Income Tax Act were satisfied when the assets moved.

The immediate practical implication for Ugandan M&A transactions is that tax planning must be integrated and built into the legal completion steps. The deal file should show the assets transferred, the consideration given, the shares issued, the register-of-members position, the voting power immediately after completion, the valuation basis, the land-transfer treatment and the withholding-tax analysis.

KEY TAKEAWAYS:

1. This is an M&A completion-risk decision: The dispute arose from an asset exchange between Unga Millers Uganda Limited and Tunga Nutrition (U) Limited. For the High Court, the issue was not the commercial label attached to the transaction, but whether the statutory conditions for roll-over relief were proved.

2. Roll-over relief qualification must be proved: A taxpayer claiming section 76 roll-over relief must show, among other things, that business assets were transferred, that shares were issued as consideration, and that the transferor had at least 50% voting power in the transferee immediately after the transfer.

3. Completion corporate records: The Court placed weight on the absence of primary corporate records, including the register of members and formal share-allotment evidence. In an M&A transaction, these records are not mere administration. They may determine whether the intended tax treatment survives a URA review.

4. Transaction/deal advice that integrates legal and tax: A live M&A transaction may involve roll-over relief, land-transfer rules, stamp duty, VAT, international tax, transfer pricing, shareholder taxation, sector approvals or other deal-specific risks that cut across both legal and tax.

VAT and Income Tax Reporting Variances: Uganda Corporate Tax Controversy Insights from Ericsson AB v URA

The Tax Appeals Tribunal has recently handed down a key VAT decision in a dispute arising from URA’s examination of Ericsson AB’s tax returns for the 2013-2017 years, spanning VAT and branch profit / income-tax components. The dispute narrowed to the VAT treatment of an unreconciled turnover variance and the lawfulness of agency notices, AND brought four central questions of law before the Tribunal:

1. Turnover Variances: When may URA treat a VAT-to-income-tax turnover variance as VAT-exclusive rather than VAT-inclusive?

2. Shifting Assessment Bases: Can URA materially alter the underlying basis of an assessment during mediation without issuing a fresh tax decision?

3. Unbilled Revenue Timing: Does the mere accounting recognition of unbilled revenue prove that a statutory VAT obligation has accrued?

4. Enforcement Timelines: Can URA enforce recovery through third-party agency notices while a taxpayer’s statutory objection rights remain active?

The ruling delivers crucial controversy lessons for corporate taxpayers navigating complex audits.

The Tribunal confirmed that VAT-to-income-tax turnover variances and accounting recognition of unbilled revenue are not automatic proxies for VAT liability—URA must still establish a strict statutory trigger.

Furthermore, the decision exposes the procedural unlawfulness of enforcing agency notices during an active objection window. Read our full analysis to understand how this pivotal ruling shapes corporate tax defence and the commercial necessity of proactive reconciliation files.

Uganda’s Interest Expense Deductibility Rules and Corporate Financing Insights from Micro-Haem v URA

Uganda’s Tax Appeals Tribunal has recently handed down a key decision on interest expense cap rules under the Income Tax Act, which reinforces the practical shift introduced by the High Court in Moil Uganda Ltd v Uganda Revenue Authority: belonging to a corporate group does not, by itself, trigger the section 25(3) interest expense cap where the financing involves genuine third-party debt from outside the group structure.

Key Commentary Takeaways:

Persistent Tax Risk: Uganda’s interest-limitation rule under section 25(3) of the Income Tax Act remains a material tax-risk provision for companies operating within commonly owned corporate structures.

Limitation on Group Theory: Micro-Haem confirms that corporate group status alone cannot justify applying the section 25(3) cap where the disputed borrowing is genuine third-party debt sourced from outside the group.

A Narrow Taxpayer Victory: The taxpayer’s success was carefully confined: the assessment was set aside on the third-party debt point, while group ownership, dormancy and exemption remained live issues requiring strict evidentiary proof.

Commercial Takeaway: For corporate financing, the origin, structure and evidentiary support for debt now matter as much as the company’s ownership map.

Uganda’s FY 2026/27 Budget and Tax Amendments: Revenue Mobilisation and the Business Resilience Test.

The FY 2026/27 Budget for Uganda focuses on full monetisation and growth through enhanced domestic revenue mobilisation, digital compliance, and targeted tax amendments, while aiming for fiscal self-reliance.

The Budget emphasizes job creation, sector-specific support, and infrastructure investment. However, the implications for businesses and taxpayers include a shift towards a more digitised and compliance-heavy tax environment, with selective relief measures that may not cushion broader economic pressures.

Challenges such as increased costs for fuel, construction materials, and the contemplated higher regulatory compliance costs necessitate proactive strategies from businesses to navigate this demanding fiscal landscape and ensure resilience amid changing tax dynamics.